SRX114986
GSM859506: T-ALL H3K4me3 replicate 1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
T-ALL
NA
NA

Attributes by original data submitter

Sample

source_name
T-ALL H3K4me3
cell type
Notch1-IC over-expressing tumors (T-ALL)
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM859506: T-ALL H3K4me3 replicate 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24073901
Reads aligned (%)
92.8
Duplicates removed (%)
41.0
Number of peaks
309 (qval < 1E-05)

mm9

Number of total reads
24073901
Reads aligned (%)
92.1
Duplicates removed (%)
40.8
Number of peaks
520 (qval < 1E-05)

Base call quality data from DBCLS SRA