SRX114979
GSM859499: DP H3K4me3 replicate 2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
DP H3K4me3
cell type
CD4+/8+ Double Positive (DP) cells
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM859499: DP H3K4me3 replicate 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20568736
Reads aligned (%)
91.2
Duplicates removed (%)
28.6
Number of peaks
372 (qval < 1E-05)

mm9

Number of total reads
20568736
Reads aligned (%)
90.7
Duplicates removed (%)
28.5
Number of peaks
443 (qval < 1E-05)

Base call quality data from DBCLS SRA