Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

source_name
EBNA3A 4HT ChIP-seq RAD21
cell type
Lymphoblastoid Cell Line
genotype/variation
EBNA3A on

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was done using the ChIP assay kit protocol (Millipore). Cut and run was done following the protocol from CUTANA™ ChIC/CUT&RUN Kit (Epicypher). Libraries were prepared using NEB library preparation kit.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
12865313
Reads aligned (%)
97.2
Duplicates removed (%)
3.1
Number of peaks
20117 (qval < 1E-05)

hg19

Number of total reads
12865313
Reads aligned (%)
96.4
Duplicates removed (%)
3.2
Number of peaks
20495 (qval < 1E-05)

Base call quality data from DBCLS SRA