SRX114682
GSM857389: P19 with NeuroD2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Neurod2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
P19
Tissue
Embryo
Disease
Teratocarcinoma; Embryonal Carcinoma

Attributes by original data submitter

Sample

source_name
P19_NeuroD2_ChIP-seq
cell type
P19 cells
genotype/variation
transduced with NeuroD2 lentivirus
chip antibody
two NEUROD2 antibodies raised in rabbits by our lab (1240J, 1168J)

Sequenced DNA Library

library_name
GSM857389: P19 with NeuroD2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17938917
Reads aligned (%)
95.0
Duplicates removed (%)
7.7
Number of peaks
45856 (qval < 1E-05)

mm9

Number of total reads
17938917
Reads aligned (%)
94.9
Duplicates removed (%)
7.9
Number of peaks
45896 (qval < 1E-05)

Base call quality data from DBCLS SRA