SRX114608
GSM857202: LANA 2 BCBL1 ChIP-Seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KSHV LANA

Cell type

Cell type Class
Blood
Cell type
BCBL1
NA
NA

Attributes by original data submitter

Sample

source_name
BCBL1 Pleural Effusion Lymphoma (PEL)cell line
cell line
BCBL1
genotype/variation
KSHV positive PEL
chip-antibody
LANA rat monoclonal antibody

Sequenced DNA Library

library_name
GSM857202: LANA_2_BCBL1_ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14388640
Reads aligned (%)
97.2
Duplicates removed (%)
12.0
Number of peaks
297 (qval < 1E-05)

hg19

Number of total reads
14388640
Reads aligned (%)
96.3
Duplicates removed (%)
13.5
Number of peaks
634 (qval < 1E-05)

Base call quality data from DBCLS SRA