SRX113616
GSM855094: H3K9me3 nucleosome-IP from wild type C. elegans from a multigenerational RNAi experiment, P0 generation; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Adult
Cell type
Adult
NA
NA

Attributes by original data submitter

Sample

source_name
adult C. elegans
chip antibody
anti-H3K9me3 antibody
chip antibody manufacturer
Abcam
genetic background
N2
strain
wild type
developmental stage
adult
RNAi target
chrI:6,907,993-6,909,159 (smg-1)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
7097223
Reads aligned (%)
95.7
Duplicates removed (%)
30.2
Number of peaks
669 (qval < 1E-05)

ce10

Number of total reads
7097223
Reads aligned (%)
95.7
Duplicates removed (%)
30.2
Number of peaks
652 (qval < 1E-05)

Base call quality data from DBCLS SRA