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For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K9me3
wikigenes
PDBj
CellType: Adult
ATCC
MeSH
RIKEN BRC
SRX113605
GSM855083: H3K9me3 nucleosome-IP from wild type C. elegans that underwent smg-1 (3'-UTR) RNAi; Caenorhabditis elegans; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K9me3
Cell type
Cell type Class
Adult
Cell type
Adult
NA
NA
Attributes by original data submitter
Sample
source_name
adult C. elegans
chip antibody
anti-H3K9me3 antibody
chip antibody manufacturer
Abcam
genetic background
N2
strain
wild type
developmental stage
adult
RNAi target
chrI:6,901,030-6,901,541 (smg-1)
Sequenced DNA Library
library_name
GSM855083: H3K9me3 nucleosome-IP from wild type C. elegans that underwent smg-1 (3'-UTR) RNAi
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
11435261
Reads aligned (%)
94.7
Duplicates removed (%)
41.5
Number of peaks
1917 (qval < 1E-05)
ce10
Number of total reads
11435261
Reads aligned (%)
94.7
Duplicates removed (%)
41.5
Number of peaks
1915 (qval < 1E-05)
Base call quality data from
DBCLS SRA