Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RYBP

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
293T-Rex, RYBP ChIP
cell line
293T-Rex
transgene
Flag-HA (empty vector)
chip antibody
RYBP
chip antibody vendor
Sigma
chip antibody lot
22270004

Sequenced DNA Library

library_name
GSM855018: RYBP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
18389205
Reads aligned (%)
89.7
Duplicates removed (%)
8.8
Number of peaks
1200 (qval < 1E-05)

hg38

Number of total reads
18389205
Reads aligned (%)
91.5
Duplicates removed (%)
7.5
Number of peaks
802 (qval < 1E-05)

Base call quality data from DBCLS SRA