Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PCGF6

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
293T-Rex, FH-PCGF6.HA ChIP
cell line
293T-Rex
transgene
Flag-HA-PCGF6
chip antibody
HA
chip antibody vendor
Abcam
chip antibody lot
GR20600-2

Sequenced DNA Library

library_name
GSM855013: FH-PCGF6.HA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
23786161
Reads aligned (%)
80.8
Duplicates removed (%)
17.6
Number of peaks
785 (qval < 1E-05)

hg38

Number of total reads
23786161
Reads aligned (%)
82.6
Duplicates removed (%)
16.4
Number of peaks
477 (qval < 1E-05)

Base call quality data from DBCLS SRA