SRX112950
GSM851300: RenLab-H3K4me3-embryonic-liver

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryo
Cell type
Embryobic liver
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse E14.5 liver
strain
C57BL/6
antibody
Millipore, 05-745

Sequenced DNA Library

library_name
GSM851300: RenLab-H3K4me3-embryonic-liver
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
38886435
Reads aligned (%)
83.8
Duplicates removed (%)
30.3
Number of peaks
31637 (qval < 1E-05)

mm9

Number of total reads
38886435
Reads aligned (%)
83.7
Duplicates removed (%)
30.4
Number of peaks
31722 (qval < 1E-05)

Base call quality data from DBCLS SRA