SRX112948
GSM851298: RenLab-CTCF-embryonic-liver

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Embryobic liver
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse E14.5 liver
strain
C57BL/6
antibody
Kim et al., 2007

Sequenced DNA Library

library_name
GSM851298: RenLab-CTCF-embryonic-liver
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
23049525
Reads aligned (%)
37.9
Duplicates removed (%)
35.0
Number of peaks
1026 (qval < 1E-05)

mm9

Number of total reads
23049525
Reads aligned (%)
37.6
Duplicates removed (%)
34.7
Number of peaks
1068 (qval < 1E-05)

Base call quality data from DBCLS SRA