SRX112936
GSM851286: RenLab-CTCF-embryonic-heart

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse E14.5 heart
strain
C57BL/6
antibody
Kim et al., 2007

Sequenced DNA Library

library_name
GSM851286: RenLab-CTCF-embryonic-heart
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6780246
Reads aligned (%)
89.1
Duplicates removed (%)
36.1
Number of peaks
1872 (qval < 1E-05)

mm9

Number of total reads
6780246
Reads aligned (%)
88.9
Duplicates removed (%)
36.5
Number of peaks
1874 (qval < 1E-05)

Base call quality data from DBCLS SRA