SRX112931
GSM851281: RenLab-H3K4me1-embryonic-brain

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse E14.5 brain
strain
C57BL/6
antibody
Abcam, ab8895

Sequenced DNA Library

library_name
GSM851281: RenLab-H3K4me1-embryonic-brain
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
84760373
Reads aligned (%)
67.0
Duplicates removed (%)
29.2
Number of peaks
61641 (qval < 1E-05)

mm9

Number of total reads
84760373
Reads aligned (%)
67.0
Duplicates removed (%)
29.2
Number of peaks
61651 (qval < 1E-05)

Base call quality data from DBCLS SRA