SRX112916
GSM850406: E14-serum H3K9me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem cells
strain
129/Ola
cell type
ES-cells
source
Chromatin IP against H3K9me3
antibody
Antibody H3K9me3 (Abcam ab8898-100, lot. 733953)

Sequenced DNA Library

library_name
GSM850406: E14-serum_H3K9me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
38775468
Reads aligned (%)
94.5
Duplicates removed (%)
29.4
Number of peaks
2518 (qval < 1E-05)

mm9

Number of total reads
38775468
Reads aligned (%)
93.9
Duplicates removed (%)
29.3
Number of peaks
2651 (qval < 1E-05)

Base call quality data from DBCLS SRA