SRX112546
GSM850825: PatientA ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1T1

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

source_name
Blast cells from human patient A with t(8;21) AML
cell type
t(8;21) AML patient Blast cells
antibody
ETO (E/S19)

Sequenced DNA Library

library_name
GSM850825: PatientA_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18790970
Reads aligned (%)
96.7
Duplicates removed (%)
20.9
Number of peaks
514 (qval < 1E-05)

hg19

Number of total reads
18790970
Reads aligned (%)
95.8
Duplicates removed (%)
21.5
Number of peaks
450 (qval < 1E-05)

Base call quality data from DBCLS SRA