SRX11245136
GSM5405998: ASCL1 0h; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ASCL1

Cell type

Cell type Class
Lung
Cell type
DMS 53
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Small Cell

Attributes by original data submitter

Sample

source_name
ChIP material from SCLC samples treated 0 or 4h with a dna binding drug
cell type
DMS-53
chip antibody
ASCL1
treatment
untreated

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
none provided by the submitter

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
62780744
Reads aligned (%)
69.5
Duplicates removed (%)
53.2
Number of peaks
43449 (qval < 1E-05)

hg19

Number of total reads
62780744
Reads aligned (%)
69.2
Duplicates removed (%)
54.0
Number of peaks
43339 (qval < 1E-05)

Base call quality data from DBCLS SRA