Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NEUROD1

Cell type

Cell type Class
Lung
Cell type
DMS 53
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Small Cell

Attributes by original data submitter

Sample

source_name
ChIP material from SCLC samples treated 0 or 4h with a dna binding drug
cell type
DMS-53
chip antibody
NeuroD1
treatment
untreated

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
40483952
Reads aligned (%)
82.8
Duplicates removed (%)
58.3
Number of peaks
17121 (qval < 1E-05)

hg19

Number of total reads
40483952
Reads aligned (%)
82.4
Duplicates removed (%)
59.1
Number of peaks
18414 (qval < 1E-05)

Base call quality data from DBCLS SRA