SRX1123822
GSM1835850: ChIP-seq RT407 H3K27Ac; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
RT407
tissue id
RT407
tissue source/type
primary kidney rhabdoid tumor tissue
chip antibody
H3K27ac (Cell Signaling Technology, D5E4, 8173)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
lysis (SDS) of sonicated (Branson) nuclei, ChIP with antibodies and Dynabeads single read Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38926883
Reads aligned (%)
97.1
Duplicates removed (%)
80.9
Number of peaks
262 (qval < 1E-05)

hg19

Number of total reads
38926883
Reads aligned (%)
96.4
Duplicates removed (%)
82.5
Number of peaks
284 (qval < 1E-05)

Base call quality data from DBCLS SRA