Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

regenerating liver harvested 12 h after PH

strain

C57BL6/J

gender

male

age

2-3 months

tissue

liver

treatment

dextrose (22.5% in vehicle)

chip antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

As described in Huang et al., Identification of an epigenetic signature of early mouse liver regeneration that is disrupted by Zn-HDAC inhibition, Epigenetics, 2015. PubMed: 25482284

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

18073279

Reads aligned (%)

96.6

Duplicates removed (%)

27.6

Number of peaks

648 (qval < 1E-05)

mm9

Number of total reads

18073279

Reads aligned (%)

96.0

Duplicates removed (%)

27.6

Number of peaks

674 (qval < 1E-05)