SRX1123622
GSM1835792: Input (Lhx6); Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Maxillary arch
NA
NA

Attributes by original data submitter

Sample

source_name
E11.5 Maxillary Arch
genotype
Wild-type (CD1)
chip antibody
None
tissue
E11.5 Maxillary Arch

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
36217446
Reads aligned (%)
98.4
Duplicates removed (%)
8.5
Number of peaks
539 (qval < 1E-05)

mm9

Number of total reads
36217446
Reads aligned (%)
98.2
Duplicates removed (%)
8.5
Number of peaks
543 (qval < 1E-05)

Base call quality data from DBCLS SRA