Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Neural

Cell type

Retina

MeSH Description

The ten-layered nervous tissue membrane of the eye. It is continuous with the OPTIC NERVE and receives images of external objects and transmits visual impulses to the brain. Its outer surface is in contact with the CHOROID and the inner surface with the VITREOUS BODY. The outer-most layer is pigmented, whereas the inner nine layers are transparent.

Sample

source_name

Retina

background strain

ICR

tissue

retina

age

postnatal day 8

cd73 status

positive

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Sonicated cell extract was incubated with antibody and DynaBeads. DNA was extracted and purified by QIAquick PCR purification kit. ChIP-seq libraries were suquenced using HiSeqplatfom.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

40281312

Reads aligned (%)

96.8

Duplicates removed (%)

17.0

Number of peaks

1188 (qval < 1E-05)

mm9

Number of total reads

40281312

Reads aligned (%)

96.5

Duplicates removed (%)

17.0

Number of peaks

1088 (qval < 1E-05)