SRX112184
GSM850475: RNAPII S5PRepeat ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Undifferentiated ES cells
modification
RNAPII S5P
cell line
OS25 ES cells
chip antibody
CTD4H8 (MMS-128P, Covance)
chip antibody manufacturer
Covance
chromatin
Fixed
beads
Sepharose beads

Sequenced DNA Library

library_name
GSM850475: RNAPII S5PRepeat ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6538760
Reads aligned (%)
75.1
Duplicates removed (%)
4.1
Number of peaks
8240 (qval < 1E-05)

mm9

Number of total reads
6538760
Reads aligned (%)
74.9
Duplicates removed (%)
4.4
Number of peaks
8299 (qval < 1E-05)

Base call quality data from DBCLS SRA