SRX112180
GSM850471: H2Aub1 ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2Aub

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Undifferentiated ES cells
modification
H2Aub1
cell line
OS25 ES cells
chip antibody
E6C5 (Upstate)
chip antibody manufacturer
Upstate
chromatin
Native
beads
Magnetic beads

Sequenced DNA Library

library_name
GSM850471: H2Aub1 ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25058564
Reads aligned (%)
95.0
Duplicates removed (%)
21.6
Number of peaks
381 (qval < 1E-05)

mm9

Number of total reads
25058564
Reads aligned (%)
94.8
Duplicates removed (%)
21.6
Number of peaks
387 (qval < 1E-05)

Base call quality data from DBCLS SRA