Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Cardiovascular
Cell type
Cardiomyocytes
NA
NA

Attributes by original data submitter

Sample

source_name
cardiomyocytes
strain
C57BL/6
tissue
heart
developmental stage
P1
chip antibody
H3K4me2 (Abcam, Ab7766)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody anti-H3K4me2. Libraries were prepared using Nugen Ovation Ultralow System Cat No 0344. Briefly, DNA was end-repaired, A-tailed, adapter ligated and amplified with 10 cycles of PCR. DNA libraries were purified using Agencourt XP Beads, quantified with the Qubit, run on a bioanalzyer tape station and clustered to an Illumina HiSEQ 2500 High Throughput Flow Cell.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
49925808
Reads aligned (%)
99.2
Duplicates removed (%)
5.9
Number of peaks
25735 (qval < 1E-05)

mm9

Number of total reads
49925808
Reads aligned (%)
99.1
Duplicates removed (%)
5.9
Number of peaks
25813 (qval < 1E-05)

Base call quality data from DBCLS SRA