Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
fibroblasts
strain
C57BL/6
tissue
embryo
developmental stage
E14.5
chip antibody
H3K4me2 (Abcam, Ab7766)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody anti-H3K4me2. Libraries were prepared using Nugen Ovation Ultralow System Cat No 0344. Briefly, DNA was end-repaired, A-tailed, adapter ligated and amplified with 10 cycles of PCR. DNA libraries were purified using Agencourt XP Beads, quantified with the Qubit, run on a bioanalzyer tape station and clustered to an Illumina HiSEQ 2500 High Throughput Flow Cell.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
24804827
Reads aligned (%)
99.3
Duplicates removed (%)
5.5
Number of peaks
10995 (qval < 1E-05)

mm9

Number of total reads
24804827
Reads aligned (%)
99.2
Duplicates removed (%)
5.6
Number of peaks
11017 (qval < 1E-05)

Base call quality data from DBCLS SRA