SRX111898
GSM849957: mES H2AZ MLL4KD; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.Z

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse ES cells, shMLL4, H2A.Z ChIP
cell line
R1
cell type
embryonic stem cells
condition
shMLL4 mES cells

Sequenced DNA Library

library_name
GSM849957: mES_H2AZ_MLL4KD
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
36219729
Reads aligned (%)
92.5
Duplicates removed (%)
30.1
Number of peaks
17956 (qval < 1E-05)

mm9

Number of total reads
36219729
Reads aligned (%)
92.5
Duplicates removed (%)
30.2
Number of peaks
17730 (qval < 1E-05)

Base call quality data from DBCLS SRA