SRX111893
GSM849952: mES H2AZ shluc ctrl for MLL4KD; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.Z

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse ES cells, shluc control, H2A.Z ChIP
cell line
R1
cell type
embryonic stem cells
condition
shluc control for shMLL4 mES cells

Sequenced DNA Library

library_name
GSM849952: mES_H2AZ_shluc_ctrl_for_MLL4KD
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35347359
Reads aligned (%)
94.6
Duplicates removed (%)
27.0
Number of peaks
26956 (qval < 1E-05)

mm9

Number of total reads
35347359
Reads aligned (%)
94.5
Duplicates removed (%)
27.1
Number of peaks
27002 (qval < 1E-05)

Base call quality data from DBCLS SRA