SRX111885
GSM849944: mES RbBP5 H2AZKD; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rbbp5

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse ES cells, shH2A.Z, RbBP5 ChIP
cell line
CMTi-1
cell type
embryonic stem cells
condition
shH2A.Z mES cells

Sequenced DNA Library

library_name
GSM849944: mES_RbBP5_H2AZKD
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
26165502
Reads aligned (%)
93.1
Duplicates removed (%)
22.7
Number of peaks
4786 (qval < 1E-05)

mm9

Number of total reads
26165502
Reads aligned (%)
93.0
Duplicates removed (%)
22.8
Number of peaks
4748 (qval < 1E-05)

Base call quality data from DBCLS SRA