Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
GM12868
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed.

Attributes by original data submitter

Sample

source_name
GM12868
biomaterial_provider
Coriell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
ChIP-seq
cell
GM12868
cell organism
human
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed.
cell lineage
mesoderm
cell sex
F
antibody
CTCF
antibody antibodydescription
rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname
Millipore
antibody vendorid
07-729
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
GM12868/None/Input/std
labexpid
DS10996
labversion
Bowtie 0.12.7
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM849300: UW_ChipSeq_GM12868_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
31468885
Reads aligned (%)
70.8
Duplicates removed (%)
18.7
Number of peaks
38205 (qval < 1E-05)

hg38

Number of total reads
31468885
Reads aligned (%)
72.5
Duplicates removed (%)
17.6
Number of peaks
36751 (qval < 1E-05)

Base call quality data from DBCLS SRA