SRX111771
GSM849031: UW DnaseDgf HPAF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Cardiovascular
Cell type
HPAF
Tissue
blood vessel
Lineage
mesoderm
Description
pulmonary artery fibroblasts

Attributes by original data submitter

Sample

source_name
HPAF
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseDgf
datatype description
DNase Digital Footprinting
cell
HPAF
cell organism
human
cell description
pulmonary artery fibroblasts
cell lineage
mesoderm
cell sex
U
labversion
Bowtie 0.12.7

Sequenced DNA Library

library_name
GSM849031: UW_DnaseDgf_HPAF
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
320990135
Reads aligned (%)
96.1
Duplicates removed (%)
57.9
Number of peaks
212824 (qval < 1E-05)

hg19

Number of total reads
320990135
Reads aligned (%)
95.5
Duplicates removed (%)
59.2
Number of peaks
217202 (qval < 1E-05)

Base call quality data from DBCLS SRA