Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Cardiovascular

Cell type

AoAF

Tissue

blood vessel

Lineage

mesoderm

Description

aortic adventitial fibroblast cells

Sample

source_name

AoAF

biomaterial_provider

Lonza

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseDgf

datatype description

DNase Digital Footprinting

cell

AoAF

cell organism

human

cell description

aortic adventitial fibroblast cells

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

labversion

Bowtie 0.12.7

Sequenced DNA Library

library_name

GSM849029: UW_DnaseDgf_AoAF

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

393665970

Reads aligned (%)

97.2

Duplicates removed (%)

52.2

Number of peaks

220651 (qval < 1E-05)

hg19

Number of total reads

393665970

Reads aligned (%)

96.5

Duplicates removed (%)

54.0

Number of peaks

218729 (qval < 1E-05)