Antigen

Antigen Class

TFs and others

Antigen

TFAM

Cell type

Cell type Class

Blood

Cell type

K-562

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Chronic Myelogenous

Sample

biosample type

cell line

cell line

K562

sex

female

health state

chronic myelogenous leukemia (CML)

dev_stage

adult

age

53 year

donor ID

ENCDO000AAD

lab

Michael Snyder, Stanford

source

ATCC

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/716003cd-3ce7-41ce-b1e3-6f203b6632a0/@@download/attachment/ENCODE4%20_Snyder_ChIP-seq_BiorupterTruSeqProtocol_v1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

50006935

Reads aligned (%)

97.1

Duplicates removed (%)

37.9

Number of peaks

1160 (qval < 1E-05)

hg19

Number of total reads

50006935

Reads aligned (%)

95.7

Duplicates removed (%)

38.5

Number of peaks

391 (qval < 1E-05)