Antigen

Antigen Class

TFs and others

Antigen

BRCA2

Cell type

Cell type Class

Breast

Cell type

MCF-7

Primary Tissue

Breast

Site of Extraction

Pleura

Tissue Diagnosis

Adenocarcinoma

Sample

biosample type

cell line

cell line

MCF-7

sex

female

health state

breast cancer (adenocarcinoma)

dev_stage

adult

age

69 year

donor ID

ENCDO000AAE

lab

Michael Snyder, Stanford

source

Michael Snyder

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/716003cd-3ce7-41ce-b1e3-6f203b6632a0/@@download/attachment/ENCODE4%20_Snyder_ChIP-seq_BiorupterTruSeqProtocol_v1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

47488551

Reads aligned (%)

97.8

Duplicates removed (%)

36.5

Number of peaks

2277 (qval < 1E-05)

hg19

Number of total reads

47488551

Reads aligned (%)

96.8

Duplicates removed (%)

37.1

Number of peaks

1126 (qval < 1E-05)