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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Gli2
wikigenes
PDBj
CellType: Embryonic limb
ATCC
MeSH
RIKEN BRC
SRX1115332
GSM1829647: Limb bud Gli2 ChIP-seq; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Gli2
Cell type
Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA
Attributes by original data submitter
Sample
source_name
Limb bud
developmental stage
E10.5
antibody
Gli2 (R&D Systems, AF3635)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Samples were crosslinked for 30' in 1% formaldehyde, lysed in (140mM NaCl, 0.5% NP40, 0.25% Triton-X 100, 10% glycerol, 1mM EDTA, 50mM HEPES-KOH, pH7.5) and cleared by sonication Libraries were prepared according to Illumina protocols
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
15593
Reads aligned (%)
97.3
Duplicates removed (%)
38.0
Number of peaks
0 (qval < 1E-05)
mm9
Number of total reads
15593
Reads aligned (%)
97.3
Duplicates removed (%)
38.0
Number of peaks
0 (qval < 1E-05)
Base call quality data from
DBCLS SRA