Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gli2

Cell type

Cell type Class
Embryo
Cell type
Embryonic head
NA
NA

Attributes by original data submitter

Sample

source_name
Head
developmental stage
E10.5
antibody
Gli2 (R&D Systems, AF3635)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Samples were crosslinked for 30' in 1% formaldehyde, lysed in (140mM NaCl, 0.5% NP40, 0.25% Triton-X 100, 10% glycerol, 1mM EDTA, 50mM HEPES-KOH, pH7.5) and cleared by sonication Libraries were prepared according to Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
21907
Reads aligned (%)
96.8
Duplicates removed (%)
47.7
Number of peaks
0 (qval < 1E-05)

mm9

Number of total reads
21907
Reads aligned (%)
96.8
Duplicates removed (%)
47.7
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA