Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
Primary non-B cells
strain
C57BL/6
cell type
non-B cells from spleen
genotype
Trp53+/+
treatment
mock

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Whole cell extracts were sonicated to solubilize the chromatin. The chromatin extracts containing DNA fragments with an average size of 250 bp were immunoprecipitated using p53 NCL-p53-CM5p (Novocastra laboratories) antibody. Libraries were prepared for Illumina sequencing using a standard protocol consisting in blunting, addition of dA overhangs, ligation of Illumina adapters, selection on gel and PCR with index primers.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
46334646
Reads aligned (%)
71.7
Duplicates removed (%)
25.3
Number of peaks
1320 (qval < 1E-05)

mm9

Number of total reads
46334646
Reads aligned (%)
71.5
Duplicates removed (%)
25.2
Number of peaks
1173 (qval < 1E-05)

Base call quality data from DBCLS SRA