SRX111319
GSM848787: Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
BE(2)-C
Primary Tissue
Brain
Site of Extraction
Bone Marrow
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
BE2C/Tet-Off/HOXC9_Doxy-_6d_Input
cell line
BE(2)-C/Tet-Off/Myc-HOXC9
tumor cell type
Neuroblastoma
chip antibody
None
tissue origin
Sympathetic nervous system

Sequenced DNA Library

library_name
GSM848787: Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41735085
Reads aligned (%)
92.9
Duplicates removed (%)
23.4
Number of peaks
1399 (qval < 1E-05)

hg19

Number of total reads
41735085
Reads aligned (%)
91.9
Duplicates removed (%)
24.6
Number of peaks
1261 (qval < 1E-05)

Base call quality data from DBCLS SRA