SRX111229
GSM847876: ChIP-seq TNFa induced Replicate 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Lung cancer cell line
protocol
TNFa induced
cell line
A549
chip antibody
f-6 (Santa-Cruz)
experiment type
ChIP-seq

Sequenced DNA Library

library_name
GSM847876: ChIP-seq TNFa induced Replicate 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28525432
Reads aligned (%)
94.4
Duplicates removed (%)
9.2
Number of peaks
35891 (qval < 1E-05)

hg19

Number of total reads
28525432
Reads aligned (%)
93.9
Duplicates removed (%)
9.8
Number of peaks
35899 (qval < 1E-05)

Base call quality data from DBCLS SRA