SRX110760
GSM846906: Pol II ChIP-seq from 6-8 h Drosophila muscle cells, 8WG16 antibody, replicate 2; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Embryo
Cell type
Muscle cells
NA
NA

Attributes by original data submitter

Sample

source_name
muscle FAC sorted from dissociated embryos
genetic background
Dmef2-GAL4}
time point
06 to 08h AEL
chip antibody
Pol II (8WG16, Covance)
chip antibody manufacturer
Covance

Sequenced DNA Library

library_name
GSM846906: Pol II ChIP-seq from 6-8 h Drosophila muscle cells, 8WG16 antibody, replicate 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
39773699
Reads aligned (%)
70.0
Duplicates removed (%)
55.7
Number of peaks
12282 (qval < 1E-05)

dm3

Number of total reads
39773699
Reads aligned (%)
71.2
Duplicates removed (%)
55.3
Number of peaks
13055 (qval < 1E-05)

Base call quality data from DBCLS SRA