SRX110643
GSM845238: H3K4me1 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
chip antibody
H3K4me1
chip antibody manufacturer
Abcam
chip antibody catalog number
AB8895
cell line
V6.5 embryonic stem cells
drug
DMSO
concentration
30uM
time
24hours
replicate
2

Sequenced DNA Library

library_name
GSM845238: H3K4me1 rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
33742198
Reads aligned (%)
76.2
Duplicates removed (%)
29.3
Number of peaks
16792 (qval < 1E-05)

mm9

Number of total reads
33742198
Reads aligned (%)
76.1
Duplicates removed (%)
29.3
Number of peaks
16648 (qval < 1E-05)

Base call quality data from DBCLS SRA