SRX110451
GSM838022: Ubiq DMSO rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
3T3-L1 cells (ATCC #CL-173)
epitope
3FLAG
treatment
DMSO
antibody
M2 (Sigma Aldrich)
molecule
3FLAG-ubiquitin

Sequenced DNA Library

library_name
GSM838022: Ubiq_DMSO_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
212768616
Reads aligned (%)
95.1
Duplicates removed (%)
37.1
Number of peaks
1851 (qval < 1E-05)

mm9

Number of total reads
212768616
Reads aligned (%)
95.1
Duplicates removed (%)
37.1
Number of peaks
1869 (qval < 1E-05)

Base call quality data from DBCLS SRA