Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Epitope tags
wikigenes
PDBj
CellType: 3T3-L1
ATCC
MeSH
RIKEN BRC
SRX110450
GSM838021: Ubiq DMSO rep1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Epitope tags
Cell type
Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast
Attributes by original data submitter
Sample
source_name
3T3-L1 cells (ATCC #CL-173)
epitope
3FLAG
treatment
DMSO
antibody
M2 (Sigma Aldrich)
molecule
3FLAG-ubiquitin
Sequenced DNA Library
library_name
GSM838021: Ubiq_DMSO_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
133354357
Reads aligned (%)
95.8
Duplicates removed (%)
19.9
Number of peaks
1126 (qval < 1E-05)
mm9
Number of total reads
133354357
Reads aligned (%)
95.7
Duplicates removed (%)
19.9
Number of peaks
1243 (qval < 1E-05)
Base call quality data from
DBCLS SRA