SRX1100402
Shox2 Biological Replica2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Embryonic heart
NA
NA

Attributes by original data submitter

Sample

strain
Shox2-HA
dev_stage
E12.5
sex
pooled male and female
tissue
embryonic heart with ventricle dissected away

Sequenced DNA Library

library_name
Shox2 Biological Replica2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
34269240
Reads aligned (%)
96.9
Duplicates removed (%)
30.6
Number of peaks
1005 (qval < 1E-05)

mm9

Number of total reads
34269240
Reads aligned (%)
96.8
Duplicates removed (%)
30.7
Number of peaks
958 (qval < 1E-05)

Base call quality data from DBCLS SRA