SRX110016
GSM841172: LK2(GS/GS)-iPSC; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPSCs bearing homozygous LRRK2(G2019S) mutation
cell type
iPSCs
ChIP
H3K4me3

Sequenced DNA Library

library_name
GSM841172: LK2(GS/GS)-iPSC
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31489122
Reads aligned (%)
94.2
Duplicates removed (%)
25.4
Number of peaks
29121 (qval < 1E-05)

hg19

Number of total reads
31489122
Reads aligned (%)
93.6
Duplicates removed (%)
26.5
Number of peaks
28972 (qval < 1E-05)

Base call quality data from DBCLS SRA