Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
reprogramming intermediates of hiF-T cells
surface antigen enrichment
TRA-1-60+
treatment
DOX days 0-24

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
21564922
Reads aligned (%)
97.7
Duplicates removed (%)
26.8
Number of peaks
31104 (qval < 1E-05)

hg19

Number of total reads
21564922
Reads aligned (%)
97.2
Duplicates removed (%)
27.6
Number of peaks
30954 (qval < 1E-05)

Base call quality data from DBCLS SRA