SRX1098170
GSM1824406: Astromal H3K9ac ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Pancreas
Cell type
MIA Paca-2
Primary Tissue
Pancreas
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
MIA PaCa-2 cells
cell line
MIA PaCa-2
cell type
pancreatic tumor cells
chip antibody
H3K9ac
treatment
astromal

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina DNA library construction

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5094808
Reads aligned (%)
87.2
Duplicates removed (%)
3.8
Number of peaks
264 (qval < 1E-05)

hg19

Number of total reads
5094808
Reads aligned (%)
86.6
Duplicates removed (%)
4.5
Number of peaks
286 (qval < 1E-05)

Base call quality data from DBCLS SRA