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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTCF
wikigenes
PDBj
CellType: Excitatory neuron
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX10977524
GSM5331262: TF ChIP-seq from excitatory neuron (ENCLB445STV); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTCF
Cell type
Cell type Class
Neural
Cell type
Excitatory neuron
NA
NA
Attributes by original data submitter
Sample
sample type
in vitro differentiated cells
sex
male
dev stage
adult
age
53 year
donor ID
ENCDO336AAA
lab
Bradley Bernstein, Broad
source
George Church
cell type
excitatory neuron
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
29760541
Reads aligned (%)
98.7
Duplicates removed (%)
8.4
Number of peaks
20445 (qval < 1E-05)
hg19
Number of total reads
29760541
Reads aligned (%)
98.0
Duplicates removed (%)
9.4
Number of peaks
20355 (qval < 1E-05)
Base call quality data from
DBCLS SRA