SRX10977522
GSM5331260: TF ChIP-seq from excitatory neuron (ENCLB200LAA); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Neural
Cell type
Excitatory neuron
NA
NA

Attributes by original data submitter

Sample

sample type
in vitro differentiated cells
sex
male
dev stage
adult
age
53 year
donor ID
ENCDO336AAA
lab
Bradley Bernstein, Broad
source
George Church
cell type
excitatory neuron

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35686528
Reads aligned (%)
98.6
Duplicates removed (%)
7.2
Number of peaks
21535 (qval < 1E-05)

hg19

Number of total reads
35686528
Reads aligned (%)
97.8
Duplicates removed (%)
8.2
Number of peaks
21400 (qval < 1E-05)

Base call quality data from DBCLS SRA