Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Epidermis

Cell type

Foreskin

MeSH Description

The double-layered skin fold that covers the GLANS PENIS, the head of the penis.

Sample

sample_type

primary cell

cell type

foreskin keratinocyte

sex

male

dev_stage

newborn

age

2-4 day

donor ID

ENCDO005EGE

lab

Paul Khavari, Stanford

source

Paul Khavari

treatments

treatment_term_id: CHEBI:86158; treatment_term_name: calcium; treatment_type: chemical; duration: 5.5; duration_units: day;

health state

Healthy

passage number

2

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

treatment protocol: https://www.encodeproject.org/documents/126ea2fb-4317-4831-bd4f-f913a68a2513/@@download/attachment/ggr.keratinocyte.khavari-lab.chip-seq.formaldehyde-crosslinking.pdf general protocol: https://www.encodeproject.org/documents/24bcc910-0b81-4894-9904-12940effaa1c/@@download/attachment/ggr.keratinocyte.snyder-lab.chip-seq.overview.pdf general protocol: https://www.encodeproject.org/documents/d6db732c-648d-48b5-8e41-100502ad7ef2/@@download/attachment/ggr.keratinocyte.snyder-lab.chip-seq.branson_truseq.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

31448318

Reads aligned (%)

98.3

Duplicates removed (%)

14.6

Number of peaks

42481 (qval < 1E-05)

hg19

Number of total reads

31448318

Reads aligned (%)

97.7

Duplicates removed (%)

14.7

Number of peaks

41877 (qval < 1E-05)