Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Pancreas

Cell type

Pancreas

MeSH Description

A nodular organ in the ABDOMEN that contains a mixture of ENDOCRINE GLANDS and EXOCRINE GLANDS. The small endocrine portion consists of the ISLETS OF LANGERHANS secreting a number of hormones into the blood stream. The large exocrine portion (EXOCRINE PANCREAS) is a compound acinar gland that secretes several digestive enzymes into the pancreatic ductal system that empties into the DUODENUM.

Sample

sample type

tissue

tissue

pancreas

sex

female

health state

DM: no; HTN: no; CAD: no; lungs with moderate emphysema

dev_stage

adult

age

61 year

donor ID

ENCDO186XRB

lab

Michael Snyder, Stanford

source

Yiing Lin, MD, PhD

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

28223467

Reads aligned (%)

99.0

Duplicates removed (%)

4.7

Number of peaks

23791 (qval < 1E-05)

hg19

Number of total reads

28223467

Reads aligned (%)

98.2

Duplicates removed (%)

5.8

Number of peaks

23669 (qval < 1E-05)